Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs9610574 chr22:22253023 T/C 3.46E-6 494 31.28 26.27 34.32 KM Plot
PRAD rs9634360 chr13:20191596 G/T 2.99E-5 482 30.8 31.72 22.67 KM Plot
PRAD rs9638972 chr7:43594471 C/T 1.56E-6 493 31.23 31.37 14.4 KM Plot
PRAD rs9639879 chr7:43587093 C/T 8.46E-5 493 31.33 30.75 20.33 KM Plot
PRAD rs9639880 chr7:43593480 G/A 1.56E-6 493 31.23 31.37 14.4 KM Plot
PRAD rs9653117 chr19:49980529 C/T 7.19E-7 478 30.3 33.3 24.25 KM Plot
PRAD rs9659213 chr1:1129122 G/C 1.43E-5 484 31.3 29.1 24.75 KM Plot
PRAD rs9659458 chr1:1127101 C/A 1.43E-5 484 31.3 29.1 24.75 KM Plot
PRAD rs9660046 chr1:202741068 A/T 5.46E-6 490 30.87 30.77 37.17 KM Plot
PRAD rs9660926 chr1:202737047 C/T 5.26E-6 493 30.87 29.17 37.17 KM Plot
PRAD rs9676995 chr19:58245332 G/C 9.6E-6 483 31.18 30.55 24.27 KM Plot
PRAD rs9729796 chr1:202782910 G/A 6.7E-6 489 30.97 31.7 37.17 KM Plot
PRAD rs9736173 chr11:1346270 C/G 1.59E-6 480 61.83 32.63 30.15 KM Plot
PRAD rs9750018 chr2:232085298 A/G 7.34E-5 487 32.08 28.78 31.13 KM Plot
PRAD rs9754511 chr22:18441610 G/C 3.96E-6 494 30.8 31.87 26.37 KM Plot